Genome Engineering: Cut Site, Repair Choice and Editing Outcome · seed 1 · A4, ink-friendly. The answer key prints on its own page for grown-ups.

The cutter proposes, the cell decides

Science · Genetics & Evolution · ages 22-24
Name ______________________   Date ____________
  1. End joining repairs a break in a coding region. What usually results?

    • A perfect single-letter fix every time
    • No change at all
    • Small indels that often shift the reading frame
  2. What decides the final edited sequence after the cutter breaks the DNA?

    • The cell's repair pathway choice
    • The colour of the marker
    • The cutter's brand name
  3. A glowing marker in edited cells proves the edit landed correctly.

    Circle one:   True   False

  4. You design a donor template. Which design raises template repair success?

    • Short arms with the change far from centre
    • Long matching arms with the change centred
    • No matching arms at all
  5. The same guide gives knockouts in resting cells but clean fixes in dividing cells with a donor. Why?

    • Dividing cells run template repair in S and G2; resting cells mostly end join
    • The guide sequence changes between cell types
    • Resting cells lack all DNA
  6. Two guides target the same site. One has a close lookalike elsewhere with mismatches far from the seed end. Which is riskier?

    • Both are equally risky always
    • The guide with the close lookalike
    • Neither guide can ever cut off-target
  7. To guarantee a clean knock-in, it is enough to deliver the cutter without any donor and hope the cell invents the fix.

    Circle one:   True   False

  8. A team claims zero off-targets after checking two sites with a weak assay. What is the flaw?

    • Two sites are always enough with any assay
    • Off-targets are impossible in principle
    • A weak assay misses rare edits, so the safety claim outruns its evidence
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Answer key

For grown-ups. Fold this page away before handing over the rest.

The cutter proposes, the cell decides W1-mt_3DqvkO4wdE-s1

  1. Small indels that often shift the reading frame · Quick gluing leaves small clustered insertions and deletions.
  2. The cell's repair pathway choice · The nuclease only breaks; repair writes the ending.
  3. False · Markers prove delivery only; sequencing proves the edit.
  4. Long matching arms with the change centred · Long arms grip well and a centred change copies cleanly.
  5. Dividing cells run template repair in S and G2; resting cells mostly end join · Template repair needs a sister copy, so only cycling cells can use the donor well.
  6. The guide with the close lookalike · Lookalike addresses draw fire, especially with seed-distant mismatches.
  7. False · Without a donor the cell end joins, which breaks rather than precisely fixes.
  8. A weak assay misses rare edits, so the safety claim outruns its evidence · Safety claims need the most sensitive test at the likeliest lookalikes.
Worksheet · LightMySky