Gene Regulatory Networks: Motifs and What They Compute · seed 1 · A4, ink-friendly. The answer key prints on its own page for grown-ups.

Small wirings that compute

Science · Genetics & Evolution · ages 22-23
Name ______________________   Date ____________
  1. Two regulators switch each other off. What does the circuit store?

    • A toggle: one stable state or the other
    • A pulse that always fires once
    • Nothing at all
  2. A regulator represses its own gene. What wiring is this?

    • Mutual repression
    • A feed-forward loop
    • Autoregulation
  3. In the lac operon, lactose pulls the repressor off the DNA and frees the digestion genes.

    Circle one:   True   False

  4. A target fires briefly when its input switches on, then shuts itself off while input stays high. Which motif fits?

    • Negative autoregulation alone
    • An incoherent feed-forward loop
    • A plain unregulated promoter
  5. A coherent feed-forward loop gets a five second input blip, far shorter than its slow arm needs. What happens?

    • The target fires at full strength
    • The target stays off because the blip dies first
    • The circuit deletes the target gene
  6. Tryptophan is abundant in a bacterial cell. What does the trp operon do?

    • It destroys all the DNA in the cell
    • It shuts production down through its activated repressor
    • It switches on lactose digestion
  7. A student claims a coherent loop must pass every input flicker because both arms activate. What is the error?

    • Both arms never exist in real cells
    • The claim is exactly right
    • The slow arm arrives late, so brief flickers die before the target sees both
  8. An embryo needs a sharp stripe of gene activity that turns on and off on schedule. Which wiring would you propose?

    • An incoherent feed-forward loop driving a timed pulse
    • A toggle locked permanently on
    • Removing all regulators from the gene
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Answer key

For grown-ups. Fold this page away before handing over the rest.

Small wirings that compute W1-mt_QWMKReB10f-s1

  1. A toggle: one stable state or the other · Mutual repression locks the cell into one of two states.
  2. Autoregulation · A regulator controlling itself is autoregulation.
  3. True · The signal molecule removes the block, so the genes switch on.
  4. An incoherent feed-forward loop · Fire then self shutoff under steady input is the pulse computation.
  5. The target stays off because the blip dies first · Brief flickers die before both arms activate together.
  6. It shuts production down through its activated repressor · Abundant product activates the repressor, closing the production loop.
  7. The slow arm arrives late, so brief flickers die before the target sees both · Timing, not just wiring, decides: short flickers never assemble both signals.
  8. An incoherent feed-forward loop driving a timed pulse · Development draws stripes and waves with motif computed pulses.
Worksheet · LightMySky